Rob Dunn seeking community participation in suveying & analyzing Duke Forest warming chambers

Just got this email from Rob Dunn from NC State.  He said it was OK to post it ... so I am .. (I note - I just completely love this idea).

Hi folks,

As you might (or might not) know, we have for five years now been running a large-scale warming experiment in which we have warmed twelve 5 meter diameter open-top chambers in forest understory at Duke Forest. We have warmed these chambers in a regression design with the warmest chambers as warm as temperatures are predicted to be in the region in 2100 and the coolest chambers at ambient temperatures (We also have no-chamber controls). These are small worlds each of which mimics aspects of futures we might face. This entire set-up is replicated at Harvard Forest. In these chambers we have been studying the response of insects (with a focus on ants) and plants  over the last five years. When we built them these chambers were the biggest warming experiment in a forest understory in the world. I don't know if it is still true, but it probably is, if only because chambers of this size are so hard to keep going (especially in the early we felt like Fitzcarraldo dragging a ship through the rainforest) that most people have decided against repeating them elsewhere. 

Some basics on the chambers... http://robdunnlab.com/projects/warming-chambers/

I'm writing because on May 25th we are taking the chambers down and doing a final inventory of the response of everything--all the life we can possibly evaluate--to this warming. To varying extents we have considered the phenology of plants in the chambers, many things about ants in the chambers, shifts in composition of invertebrates in the chambers and simple responses of bacterial and fungal assemblages in the chambers. But, we have done all of this delicately, always mindful to not overly disturb the future world we are simulating. Now though that the chambers are coming down we can and will consider roots, plant biomass, the abundance of insect pests, fungal pathogens and much, much, more. 

As we do this intensive survey, we are hoping to train as many different eyes, lenses and perspectives on the chambers as possible. If you are potentially interested in studying some aspect of the response of understory forest life to warming, let us know. If you are interested in studying something that can be extracted from soil or litter samples, we may be able to send you material you can work on. If you have something grander in mind (and we love grand things), then we may need more help from you. If interested, send an email to me, copied to MJ Epps (Mj Epps <mycota@gmail.com>).  This collaboration might be in the form of bringing a new method to the chambers (looking at microbial processes, for instance) or considering a group of organisms we've somewhat ignored (e.g., fly larvae) or it might be something totally off the wall. Feel free to share this email with likable folks that might be interested. 

I'm also delighted to hear creative ideas about visualizing the differences that have emerged over the years of this experiment (hence the inclusion of several artists of various sorts on this email list, if you were wondering why you were copied). 

I hope this email finds you well. 

Best,

Rob

My microbiome talk at #FOGM15 - the perils (and fun I guess) of redoing one's talk at the last minute

Just got back from the Future of Genomic Medicine 2015 meeting where I gave a talk about microbiomes.  My original plan was to talk about the need for evolutionary and ecological approaches to microbiome studies but I changed my mind a few days before the meeting and decided to switch to talking more about citizen microbiology.  I did this because the meeting has a lot of people who think about digital and wearable technology and public engagement in the audience and it just seemed like a good chance to introduce them to the growing personal/citizen microbiology movement.

To help prep for my talk I emailed some colleagues who work on Citizen Microbiology (including a few in my lab like Jenna Lang and David Coil) and asked them if they had any slides I could pilfer.  And then I started drafting an outline of my talk (I draft all my talks by hand with pen and paper). Here are my handwritten notes

 I realized I would not likely be able to focus enough at home to work on the talk so I kind of waited until heading down to San Diego on Wednesday (talk was on Friday).

I got in pretty late and worked a little on my talk before going to bed.  I also emailed the organizers of the meeting to say I was changing the topic of my talk a bit and asked if they could change the online program which they did.  Eric Topol in response to my saying I wanted to talk about citizen microbiology and personal microbiomes very wisely suggested that I talk about my vision for the future of microbiome research.  I (lamely) had been so focused on Citizen Microbiology that I had not been thinking much about the bigger picture.  But once he suggested this notion my talk really congealed (in my head and on paper at least).  It is interesting to me how one simple suggestion from someone with vision and perspective can transform one's thought process so much ...

Anyway, the next day I headed over to the meeting venue (by the beach - life is rough in San Diego).  I got there in time to hear Francis Collins' talk.  I spent the day sitting outside in the outdoor tent viewing area, pondering my talk and listening to the talks of others. Lots and lots of interesting things presented there.  More about this later I hope.  Anyway - that evening I worked on my talk some more, headed down to the hotel bar for a bit and then worked on my talk some more.  And eventually went to sleep.  Friday I spent much of the AM working on my talk in the outdoor tent (while listening to the talks though this time not watching them on the screen since I was a bit too far away from it).  And voila - only 30 minutes before the PM session was to begin I finished the prep.  I do not like to do this normally but I just felt like my talk would be much better if I re-conceived it and I had to make all new slides pretty much for the whole talk (other than the few I pilfered from colleagues).

I note - I was talking after Marty Blaser and figured I would not have to introduce the human microbiome at all and also that he would give an overview of the risks that come from disturbing the microbiome.  Anyway, I gave my talk, and recorded the slideshow with Camtasia.  Below are my slides, the video slideshow, and a Storify of the Tweets others posted during my talk.
As is frequently the case, afterwards I felt I was too rushed and that it was not the best talk I have ever given. But that being said, I like the general outline and some of the concepts and figured I should share, warts and all. My biggest regret after talks which I have rushed a bit in preparing is that I usually do not do a great job in mentioning who did all the work I refer to. I try to put people's pictures and names on all slides and references but I don't always get this done in time and I worry I screwed this up for a few topics here. Oh well, life goes on ...

Here is a slideshow with Audio (which I recorded via Camtasia)



Here is the Slideshare posting of my slides

Talk for #FOGM15: Challenges and Opportunities in Microbiome Studies and the Rise of Citizen Microbiology from Jonathan Eisen